Four phenotypically and phylogenetically distinct lineages in Phytophthora lateralis.
Identifieur interne : 001525 ( Main/Exploration ); précédent : 001524; suivant : 001526Four phenotypically and phylogenetically distinct lineages in Phytophthora lateralis.
Auteurs : Clive M. Brasier [Royaume-Uni] ; Selma Franceschini ; Anna Maria Vettraino ; Everett M. Hansen ; Sarah Green ; Cecile Robin ; Joan F. Webber ; Andrea VanniniSource :
- Fungal biology [ 1878-6146 ] ; 2012.
Descripteurs français
- KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), ADN mitochondrial (composition chimique), ADN mitochondrial (génétique), Amérique du Nord (MeSH), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Asie (MeSH), Chamaecyparis (microbiologie), Données de séquences moléculaires (MeSH), Europe (MeSH), Génotype (MeSH), Maladies des plantes (microbiologie), Microbiologie du sol (MeSH), Microscopie (MeSH), Phylogenèse (MeSH), Phytophthora (classification), Phytophthora (génétique), Phytophthora (isolement et purification), Phytophthora (physiologie), Phénotype (MeSH), Spores fongiques (cytologie), Variation génétique (MeSH).
- MESH :
- composition chimique : ADN fongique, ADN mitochondrial, Phytophthora.
- cytologie : Spores fongiques.
- génétique : ADN fongique, ADN mitochondrial, Phytophthora.
- isolement et purification : Phytophthora.
- microbiologie : Chamaecyparis, Maladies des plantes.
- physiologie : Phytophthora.
- Amérique du Nord, Analyse de regroupements, Analyse de séquence d'ADN, Asie, Données de séquences moléculaires, Europe, Génotype, Microbiologie du sol, Microscopie, Phylogenèse, Phénotype, Variation génétique.
English descriptors
- KwdEn :
- Asia (MeSH), Chamaecyparis (microbiology), Cluster Analysis (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Mitochondrial (chemistry), DNA, Mitochondrial (genetics), Europe (MeSH), Genetic Variation (MeSH), Genotype (MeSH), Microscopy (MeSH), Molecular Sequence Data (MeSH), North America (MeSH), Phenotype (MeSH), Phylogeny (MeSH), Phytophthora (classification), Phytophthora (genetics), Phytophthora (isolation & purification), Phytophthora (physiology), Plant Diseases (microbiology), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Spores, Fungal (cytology).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Mitochondrial.
- chemical , genetics : DNA, Fungal, DNA, Mitochondrial.
- geographic : Asia, Europe, North America.
- classification : Phytophthora.
- cytology : Spores, Fungal.
- genetics : Phytophthora.
- isolation & purification : Phytophthora.
- microbiology : Chamaecyparis, Plant Diseases.
- physiology : Phytophthora.
- Cluster Analysis, Genetic Variation, Genotype, Microscopy, Molecular Sequence Data, Phenotype, Phylogeny, Sequence Analysis, DNA, Soil Microbiology.
Abstract
Until recently Phytophthora lateralis was known only as the cause of dieback and mortality of Chamaecyparis lawsoniana in its native range in the Pacific Northwest (PNW). Since the 1990s however disease outbreaks have occurred increasingly on ornamental C. lawsoniana in Europe; and in 2007 the pathogen was discovered in soil around old growth Chamaecyparis obtusa in Taiwan, where it may be endemic. When the phenotypes of over 150 isolates of P. lateralis from Taiwan, across the PNW (British Columbia to California) and from France, the Netherlands and the UK were compared three growth rate groups were resolved: one slow growing from Taiwan, one fast growing from the PNW and Europe, and one of intermediate growth from a small area of the UK. Within these growth groups distinct subtypes were identified based on colony patterns and spore metrics and further discriminated in a multivariate analysis. The assumption that the three main growth groups represented phylogenetic units was tested by comparative sequencing of two mitochondrial and three nuclear genes. This assumption was confirmed. In addition two phenotype clusters within the Taiwan growth group were also shown to be phylogenetically distinct. These four phenotypically and genotypically unique populations are informally designated as the PNW lineage, the UK lineage, the Taiwan J lineage, and the Taiwan K lineage. Their characteristics and distribution are described and their evolution, taxonomic, and plant health significance is discussed.
DOI: 10.1016/j.funbio.2012.10.002
PubMed: 23245617
Affiliations:
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Since the 1990s however disease outbreaks have occurred increasingly on ornamental C. lawsoniana in Europe; and in 2007 the pathogen was discovered in soil around old growth Chamaecyparis obtusa in Taiwan, where it may be endemic. When the phenotypes of over 150 isolates of P. lateralis from Taiwan, across the PNW (British Columbia to California) and from France, the Netherlands and the UK were compared three growth rate groups were resolved: one slow growing from Taiwan, one fast growing from the PNW and Europe, and one of intermediate growth from a small area of the UK. Within these growth groups distinct subtypes were identified based on colony patterns and spore metrics and further discriminated in a multivariate analysis. The assumption that the three main growth groups represented phylogenetic units was tested by comparative sequencing of two mitochondrial and three nuclear genes. This assumption was confirmed. In addition two phenotype clusters within the Taiwan growth group were also shown to be phylogenetically distinct. These four phenotypically and genotypically unique populations are informally designated as the PNW lineage, the UK lineage, the Taiwan J lineage, and the Taiwan K lineage. Their characteristics and distribution are described and their evolution, taxonomic, and plant health significance is discussed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23245617</PMID><DateCompleted><Year>2013</Year><Month>05</Month><Day>23</Day></DateCompleted><DateRevised><Year>2012</Year><Month>12</Month><Day>18</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1878-6146</ISSN><JournalIssue CitedMedium="Internet"><Volume>116</Volume><Issue>12</Issue><PubDate><Year>2012</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Fungal biology</Title><ISOAbbreviation>Fungal Biol</ISOAbbreviation></Journal><ArticleTitle>Four phenotypically and phylogenetically distinct lineages in Phytophthora lateralis.</ArticleTitle><Pagination><MedlinePgn>1232-49</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.funbio.2012.10.002</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S1878-6146(12)00171-7</ELocationID><Abstract><AbstractText>Until recently Phytophthora lateralis was known only as the cause of dieback and mortality of Chamaecyparis lawsoniana in its native range in the Pacific Northwest (PNW). Since the 1990s however disease outbreaks have occurred increasingly on ornamental C. lawsoniana in Europe; and in 2007 the pathogen was discovered in soil around old growth Chamaecyparis obtusa in Taiwan, where it may be endemic. When the phenotypes of over 150 isolates of P. lateralis from Taiwan, across the PNW (British Columbia to California) and from France, the Netherlands and the UK were compared three growth rate groups were resolved: one slow growing from Taiwan, one fast growing from the PNW and Europe, and one of intermediate growth from a small area of the UK. Within these growth groups distinct subtypes were identified based on colony patterns and spore metrics and further discriminated in a multivariate analysis. The assumption that the three main growth groups represented phylogenetic units was tested by comparative sequencing of two mitochondrial and three nuclear genes. This assumption was confirmed. In addition two phenotype clusters within the Taiwan growth group were also shown to be phylogenetically distinct. These four phenotypically and genotypically unique populations are informally designated as the PNW lineage, the UK lineage, the Taiwan J lineage, and the Taiwan K lineage. Their characteristics and distribution are described and their evolution, taxonomic, and plant health significance is discussed.</AbstractText><CopyrightInformation>Crown Copyright © 2012. Published by Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Brasier</LastName><ForeName>Clive M</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK. clive.brasier@forestry.gsi.gov.uk</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Franceschini</LastName><ForeName>Selma</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Vettraino</LastName><ForeName>Anna Maria</ForeName><Initials>AM</Initials></Author><Author ValidYN="Y"><LastName>Hansen</LastName><ForeName>Everett M</ForeName><Initials>EM</Initials></Author><Author ValidYN="Y"><LastName>Green</LastName><ForeName>Sarah</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Robin</LastName><ForeName>Cecile</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Webber</LastName><ForeName>Joan 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UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>11</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Fungal Biol</MedlineTA><NlmUniqueID>101524465</NlmUniqueID></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004272">DNA, Mitochondrial</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001208" MajorTopicYN="N" Type="Geographic">Asia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D029780" MajorTopicYN="N">Chamaecyparis</DescriptorName><QualifierName UI="Q000382" 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UI="D008853" MajorTopicYN="N">Microscopy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009656" MajorTopicYN="N" Type="Geographic">North America</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013172" MajorTopicYN="N">Spores, Fungal</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2012</Year><Month>07</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2012</Year><Month>10</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2012</Year><Month>10</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>12</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>12</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2013</Year><Month>5</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23245617</ArticleId><ArticleId IdType="pii">S1878-6146(12)00171-7</ArticleId><ArticleId IdType="doi">10.1016/j.funbio.2012.10.002</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Royaume-Uni</li></country></list><tree><noCountry><name sortKey="Franceschini, Selma" sort="Franceschini, Selma" uniqKey="Franceschini S" first="Selma" last="Franceschini">Selma Franceschini</name><name sortKey="Green, Sarah" sort="Green, Sarah" uniqKey="Green S" first="Sarah" last="Green">Sarah Green</name><name sortKey="Hansen, Everett M" sort="Hansen, Everett M" uniqKey="Hansen E" first="Everett M" last="Hansen">Everett M. Hansen</name><name sortKey="Robin, Cecile" sort="Robin, Cecile" uniqKey="Robin C" first="Cecile" last="Robin">Cecile Robin</name><name sortKey="Vannini, Andrea" sort="Vannini, Andrea" uniqKey="Vannini A" first="Andrea" last="Vannini">Andrea Vannini</name><name sortKey="Vettraino, Anna Maria" sort="Vettraino, Anna Maria" uniqKey="Vettraino A" first="Anna Maria" last="Vettraino">Anna Maria Vettraino</name><name sortKey="Webber, Joan F" sort="Webber, Joan F" uniqKey="Webber J" first="Joan F" last="Webber">Joan F. Webber</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Brasier, Clive M" sort="Brasier, Clive M" uniqKey="Brasier C" first="Clive M" last="Brasier">Clive M. Brasier</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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